PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48576.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 264aa    MW: 29074.2 Da    PI: 9.378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48576.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-1375121354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+++E+rRRdriN  +++Lr+l+P +      K++Ka+ L  +v+++k+L
  KHN48576.1  75 KSHSQAEKRRRDRINAQLATLRKLIPMS-----DKMDKATLLGSVVDHVKDL 121
                 79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3772121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1373124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1575124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-1075124No hitNo description
PfamPF000103.1E-1175121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1278127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00154169234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MESYYYSGWP LAQFNSAPNS DQLSPFSVPT TTQQTLPLVA TSTSDRAAAA SLQFGEFPSW  60
PAPIAAEDRA ASASKSHSQA EKRRRDRINA QLATLRKLIP MSDKMDKATL LGSVVDHVKD  120
LKRKAMDVSK AITVPTETDE VTIDYHQAQD ESYTKKVNIL KENIIIKASV CCDDRPELFP  180
ELIQVLKGLR LTAVKADIAS VGGRIKSILV LCSKDSEENN SVCLSTLKQS LKSAVNKIAS  240
LSVATNCPTR SKRQRFFLPS HYVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900460.0BT090046.1 Soybean clone JCVI-FLGm-3B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199204.10.0transcription factor bHLH51-like
TrEMBLA0A0B2SPK80.0A0A0B2SPK8_GLYSO; Transcription factor bHLH51
STRINGGLYMA14G06330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-51bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]