PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48579.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 127aa MW: 14169.5 Da PI: 9.0498

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48579.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.9	2.3e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la +k+ KHN48579.1 11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKD 109 6*********************************************************************************************99987 PP DUF260 100 e 100 + KHN48579.1 110 R 110 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.425	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARYATAAAT 120 ATPLLMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	6	127	6	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	6	127	6	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48579.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235882	0.0	AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016165534.1	9e-81	LOB domain-containing protein 21-like
Refseq	XP_025669058.1	7e-81	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	3e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0B2SVK9	2e-88	A0A0B2SVK9_GLYSO; LOB domain-containing protein 21
STRING	GLYMA14G06270.1	1e-78	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-65	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]