PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48628.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 321aa    MW: 35545.4 Da    PI: 7.9104
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48628.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP711.4e-221681171
     E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                rk+ksL+ll+++fl+l+ + +   + l+++a +L    v  +rRRiYDi+NVLe+++l+++k+kn++ w+g
  KHN48628.1 16 RKQKSLGLLCTNFLSLYDRGSVHLIGLDDAAIRL---GV--ERRRIYDIVNVLESIGLLSRKAKNQYIWRG 81
                79*****************999************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-241382IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.04E-151579IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-271681IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-191781IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MASSDPIPSR HCTYNRKQKS LGLLCTNFLS LYDRGSVHLI GLDDAAIRLG VERRRIYDIV  60
NVLESIGLLS RKAKNQYIWR GFVAIPHTLQ ELKEEGLKDN SNFLRGSGND NDKVSDDEDD  120
EETLSNPATG SQSDKLNPNS STLTKSLKNG NGTNCCILVE LISLDEAAKL LLGDAHNTST  180
HTTDTRKPAF RWLGSEGKTW NETLHKSNLN ESRKRAFGSD ITNISFERNN VELFTNGDSN  240
PNPKKPRMEY GSGLGQADEN NLKQGTKQAS KNYQFGPFAP ACVPKVGASE NNNLKQVHGW  300
DSLATANSPQ YQNEVRRASF V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-151596388Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525157.10.0E2F transcription factor-like E2FE
RefseqXP_014630922.10.0E2F transcription factor-like E2FE
RefseqXP_014630923.10.0E2F transcription factor-like E2FE
RefseqXP_014630924.10.0E2F transcription factor-like E2FE
RefseqXP_028231468.10.0E2F transcription factor-like E2FE
TrEMBLA0A445KJN50.0A0A445KJN5_GLYSO; E2F transcription factor-like E2FE isoform A
TrEMBLK7KMM80.0K7KMM8_SOYBN; Uncharacterized protein
STRINGGLYMA05G01760.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.28e-73DP-E2F-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]