PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN48759.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 360aa MW: 40050.5 Da PI: 8.4266

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN48759.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.2	7.9e-54	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp+k++ + +ewyfFs+r++ky++g r+nra++sgyWkatg+dk+++s ++++ KHN48759.1 17 LPPGFRFHPTDEELVVHYLKKKVDSVPLPV-SIIADVDLYKFDPWELPAKASFGAEEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPICS-GTQK 113 79**************************.89***********9888999************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk+Lvfy g+ pkg+ktdW+mheyr+ KHN48759.1 114 VGVKKSLVFYGGKPPKGVKTDWIMHEYRV 142 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-66	8	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.593	17	176	IPR003441	NAC domain
Pfam	PF02365	4.3E-28	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MESTEDSSTS SQQQPNLPPG FRFHPTDEEL VVHYLKKKVD SVPLPVSIIA DVDLYKFDPW 60 ELPAKASFGA EEWYFFSPRE RKYPNGARPN RAATSGYWKA TGTDKPICSG TQKVGVKKSL 120 VFYGGKPPKG VKTDWIMHEY RVTENKPNNR PPGCDLGHKK NSLRLDDWVL CRIYKKGNTQ 180 RSHERDDSID DMIGEVPPSI NVGHMSARFH LSRMSTSYSG ALLENDRNTL EGVVIGNGSV 240 NGISNTNNIT SVISSSHQFG TSNSKAELLP FVPSNNTSNS ASKRTLSSLY WNVDDHKHFN 300 LDSNGNVSVL RTDQENNNNN NGTSGSFATL LNQLPQTPSL PQIDGLLRTP YQIQGTNWYG

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MESTEDSSTS SQQQPNLPPG FRFHPTDEEL VVHYLKKKVD SVPLPVSIIA DVDLYKFDPW  60
ELPAKASFGA EEWYFFSPRE RKYPNGARPN RAATSGYWKA TGTDKPICSG TQKVGVKKSL  120
VFYGGKPPKG VKTDWIMHEY RVTENKPNNR PPGCDLGHKK NSLRLDDWVL CRIYKKGNTQ  180
RSHERDDSID DMIGEVPPSI NVGHMSARFH LSRMSTSYSG ALLENDRNTL EGVVIGNGSV  240
NGISNTNNIT SVISSSHQFG TSNSKAELLP FVPSNNTSNS ASKRTLSSLY WNVDDHKHFN  300
LDSNGNVSVL RTDQENNNNN NGTSGSFATL LNQLPQTPSL PQIDGLLRTP YQIQGTNWYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-73	11	178	9	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN48759.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031215	0.0	KT031215.1 Glycine max clone HN_CCL_7 NAC transcription factor (Glyma12g22790.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028192775.1	0.0	NAC transcription factor 56-like
Swissprot	Q9LD44	1e-112	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0B2SW81	0.0	A0A0B2SW81_GLYSO; NAC domain-containing protein 18
TrEMBL	I1LT13	0.0	I1LT13_SOYBN; Uncharacterized protein
STRING	GLYMA12G22790.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-107	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]