PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48855.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 347aa    MW: 39765.9 Da    PI: 4.7669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48855.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.45.5e-5761331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v+s ++
  KHN48855.1   6 LPPGFRFHPTDEELVAYYLERKITGRSIEL-DIIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHS-QK 102
                 79****************************.99**************96435566888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv+y+grap+g +t+Wvmheyrl
  KHN48855.1 103 KQVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                 99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-643157IPR003441NAC domain
PROSITE profilePS5100560.4496157IPR003441NAC domain
PfamPF023653.2E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELDIIAE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATQAGYWK ATGKDRPVHS QKKQVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIESVPGA TLSSLKDSYS LCRIFKKTIQ IPAKTNNKEE EQVENAKKES  180
MWISEEQMLG EDSSGTEISR EMEAVDEKIL NHEHPKFPCD ASSSDLTQGT CTPTDTGIAE  240
DFQPQFACDE ANSAANSYTM GIGYPTNLFQ DVQIPSYAGM HYQLPYTPLV MEDFPQINLP  300
ETKITKPEVT DDCMLYDRYR DCMNGTLEEI ISLCCTQDNS VPFPMLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-59115712165NO APICAL MERISTEM PROTEIN
1ut4_B3e-59115712165NO APICAL MERISTEM PROTEIN
1ut7_A3e-59115712165NO APICAL MERISTEM PROTEIN
1ut7_B3e-59115712165NO APICAL MERISTEM PROTEIN
3swm_A2e-59115715168NAC domain-containing protein 19
3swm_B2e-59115715168NAC domain-containing protein 19
3swm_C2e-59115715168NAC domain-containing protein 19
3swm_D2e-59115715168NAC domain-containing protein 19
3swp_A2e-59115715168NAC domain-containing protein 19
3swp_B2e-59115715168NAC domain-containing protein 19
3swp_C2e-59115715168NAC domain-containing protein 19
3swp_D2e-59115715168NAC domain-containing protein 19
4dul_A3e-59115712165NAC domain-containing protein 19
4dul_B3e-59115712165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48855.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-125AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546832.10.0NAC domain-containing protein 86
RefseqXP_028203662.10.0NAC domain-containing protein 86-like
SwissprotQ9FFI51e-84NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A445GYN20.0A0A445GYN2_GLYSO; NAC domain-containing protein 86
TrEMBLK7ME200.0K7ME20_SOYBN; Uncharacterized protein
STRINGGLYMA15G41825.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-103NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]