PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48999.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 176aa    MW: 19755.6 Da    PI: 9.4031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48999.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003394116123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++Cg+ Fs    L  H+r+H
  KHN48999.1  94 HNCSICGQGFSLGQALGGHMRRH 116
                 67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-43864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-114065IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-740116No hitNo description
PROSITE profilePS501579.394168IPR007087Zinc finger, C2H2
SMARTSM003550.614163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PfamPF139127.6E-994118IPR007087Zinc finger, C2H2
SMARTSM003550.2794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.95194121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRQRENEVT TLESWDMQIC STSITPDTSV SSSTISPEDV FECKTCNRKF NSFQALGGHR  60
ACHNKRVKME GEEQQLKTRA KYLGLGKHSE PKMHNCSICG QGFSLGQALG GHMRRHRAST  120
NDVFSSINQV VAKVSVLKRS CNDKVFYLDL NLTPLENDLK LLLFGKLSPK VNLSSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541393.11e-130zinc finger protein ZAT11
RefseqXP_028196901.11e-130zinc finger protein ZAT11-like
TrEMBLA0A0B2SWR81e-129A0A0B2SWR8_GLYSO; Zinc finger protein ZAT11
TrEMBLI1LYW11e-129I1LYW1_SOYBN; Uncharacterized protein
STRINGGLYMA13G19560.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-39C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]