PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN49093.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 119aa    MW: 13602.7 Da    PI: 10.256
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN49093.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.31e-215011752118
         NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgek 118
                 + +e+ewyfF++rdkky++g r+n+a++sgyWka g+dk+++++ + + + +kk Lvfykgr pkg+k
  KHN49093.1  50 NYGEDEWYFFTPRDKKYPNGVRPNKAAASGYWKAIGTDKPIFTScGMKSITVKKALVFYKGRPPKGSK 117
                 33678**************************************977788*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.0531119IPR003441NAC domain
PfamPF023652.3E-824109IPR003441NAC domain
SuperFamilySSF1019419.42E-2243118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MNSQWELHRE RKGSMNLLTT QMVYSLLKQH QNLQPPVAMY AILEGMHGSN YGEDEWYFFT  60
PRDKKYPNGV RPNKAAASGY WKAIGTDKPI FTSCGMKSIT VKKALVFYKG RPPKGSKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-245111968134NO APICAL MERISTEM PROTEIN
1ut4_B4e-245111968134NO APICAL MERISTEM PROTEIN
1ut7_A4e-245111968134NO APICAL MERISTEM PROTEIN
1ut7_B4e-245111968134NO APICAL MERISTEM PROTEIN
4dul_A4e-245111968134NAC domain-containing protein 19
4dul_B4e-245111968134NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN49093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354607e-82AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184581.12e-40NAC transcription factor 25-like
SwissprotQ8GY426e-31NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0B2SVX33e-85A0A0B2SVX3_GLYSO; NAC domain-containing protein 29
STRINGGLYMA05G15533.19e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-33NAC domain containing protein 25
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]