PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538681.1_FGP267
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 128aa    MW: 13937.6 Da    PI: 8.8439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538681.1_FGP267genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.41.3e-14732126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       +kt++C+ +  tG+C++G++C+FaHg
  KN538681.1_FGP267  7 WKTRICNKWEMTGYCPFGSKCHFAHG 32
                       8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-17237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-11237IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9633IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422634IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-11732IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MQKPSNWKTR ICNKWEMTGY CPFGSKCHFA HGAAELHKYG GGLVDIDSRD AAATPDSKQA  60
TVSAKAPAET AAASTAVPPH ADVYHLGVQA QRSTIAGQRS GQVQRPIQKW KGPDKISRIY  120
GDWIDETE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538681.1_FGP267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046351e-141AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046981e-141AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149641e-141AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-141CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648128.11e-78zinc finger CCCH domain-containing protein 56
RefseqXP_015648129.11e-78zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ39e-80C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0E0EI696e-86A0A0E0EI69_9ORYZ; Uncharacterized protein
STRINGOMERI08G03640.11e-86(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.17e-42C3H family protein