PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538681.1_FGP300

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 717aa MW: 81194.8 Da PI: 8.756

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538681.1_FGP300	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	12	100	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s++sk n++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ ++kw vtkl++eHnHe+ KN538681.1_FGP300 12 FYIAYAGRVGFSVRIARSRRSKCNESIIMLRFVCSKEGFSKEKHVVaGKKTRKRPASIREGCNAMLEVLRRGNSKWIVTKLVKEHNHEV 100 9*************************************999877456677777899***************************96 PP
2	FAR1	58.2	2.8e-18	134	224	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ + k+ + +r gC+a +++ +++++ w v+kl leH+Hel+p KN538681.1_FGP300 134 FYYSYATRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRETNggDPKRVQALDPSRDGCDALFEIIRKDRDAWTVSKLILEHTHELNP 224 9*****************9.6777**********9999997666777788899****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-25	12	100	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.8E-15	134	224	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.545	372	408	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-5	383	410	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.6E-4	384	405	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MEFESGEAAK TFYIAYAGRV GFSVRIARSR RSKCNESIIM LRFVCSKEGF SKEKHVVAGK 60 KTRKRPASIR EGCNAMLEVL RRGNSKWIVT KLVKEHNHEV GMPSRVHYSA MEGDTVVDPY 120 IGMEFESLEA AKTFYYSYAT RVGFEARVRQ SRKSQDESLK MLKLVCSRHR YHSGRETNGG 180 DPKRVQALDP SRDGCDALFE IIRKDRDAWT VSKLILEHTH ELNPAPTSRV RCIRSQGESL 240 YEIRRQWAPA YTRKVFCARN LLPQSCQNLE NVIEKHFSSK TQLWVAVQQL GQAVCNFYEK 300 ETQADYLTTF QMATVRTASP LEKQASSIFT RSIFEKFQDQ FAESFGYHAD RLEDDMLHKY 360 CVTVSEGDEE AHTVSFNPEK KTVGCSCCLF ESCGILCRHA LRVFIIEGVR ALPKAYILKR 420 WTKHAKSIAT VDDYIDLRGC RDDPSTTMYN DLHCDAIKCA KEGSASSELY SVAKEALHKA 480 LDEVVTLRKI RDQQNLQSCK RPIKKSAKGK DSDHSTIISS TRFSVVPWKY ALVAYLSSMN 540 MECATDECAG QWELNQVAYL AMSDEIIFTY GMSGAVHIKS VLLKAGKEHG DNLWIQLFSK 600 LIEHTWQNES RWGVEGKLCF PHYGGKREEK VEFCSNSMPR AHNATTMCSL VVLVRLQLSG 660 SEWGSIAKRL PEPELSAPGG SRPRQTCPNS WFFFLVHVSI GLLNPTKSTA PAHGLLG

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MEFESGEAAK TFYIAYAGRV GFSVRIARSR RSKCNESIIM LRFVCSKEGF SKEKHVVAGK  60
KTRKRPASIR EGCNAMLEVL RRGNSKWIVT KLVKEHNHEV GMPSRVHYSA MEGDTVVDPY  120
IGMEFESLEA AKTFYYSYAT RVGFEARVRQ SRKSQDESLK MLKLVCSRHR YHSGRETNGG  180
DPKRVQALDP SRDGCDALFE IIRKDRDAWT VSKLILEHTH ELNPAPTSRV RCIRSQGESL  240
YEIRRQWAPA YTRKVFCARN LLPQSCQNLE NVIEKHFSSK TQLWVAVQQL GQAVCNFYEK  300
ETQADYLTTF QMATVRTASP LEKQASSIFT RSIFEKFQDQ FAESFGYHAD RLEDDMLHKY  360
CVTVSEGDEE AHTVSFNPEK KTVGCSCCLF ESCGILCRHA LRVFIIEGVR ALPKAYILKR  420
WTKHAKSIAT VDDYIDLRGC RDDPSTTMYN DLHCDAIKCA KEGSASSELY SVAKEALHKA  480
LDEVVTLRKI RDQQNLQSCK RPIKKSAKGK DSDHSTIISS TRFSVVPWKY ALVAYLSSMN  540
MECATDECAG QWELNQVAYL AMSDEIIFTY GMSGAVHIKS VLLKAGKEHG DNLWIQLFSK  600
LIEHTWQNES RWGVEGKLCF PHYGGKREEK VEFCSNSMPR AHNATTMCSL VVLVRLQLSG  660
SEWGSIAKRL PEPELSAPGG SRPRQTCPNS WFFFLVHVSI GLLNPTKSTA PAHGLLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538681.1_FGP300

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110809	0.0	AK110809.1 Oryza sativa Japonica Group cDNA clone:002-171-F03, full insert sequence.
GenBank	AP005605	0.0	AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650767.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9FZ94	0.0	B9FZ94_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-43	FAR1-related sequence 3