PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538682.1_FGP214
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 246aa    MW: 26829.9 Da    PI: 10.5906
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538682.1_FGP214genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-141458347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  KN538682.1_FGP214 14 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 58
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.023663IPR017930Myb domain
SuperFamilySSF466891.79E-17963IPR009057Homeodomain-like
SMARTSM007171.6E-101161IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.2E-181262IPR006447Myb domain, plants
CDDcd001672.77E-101459No hitNo description
Gene3DG3DSA:1.10.10.605.3E-121457IPR009057Homeodomain-like
PfamPF002493.0E-121458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAWLLKFICR TAVPWTEEEH RTFLAGLEKL GKGDWRGISK NFVTTRTPTQ VASHAQKYFL  60
RQTNPNKKKR RSSLFDMMAT DMSPAPNCPV LPPSMGKLHD MVAMTKQLQN SSLEGVSSSS  120
TVNLAPQVAR DLPPPIPSFK ATNVDSSLSK MNHMDGFLRA PMLFRPIPRI AEGASSSTPA  180
TASIADLEFQ ANLTACSNAL FASPRRKPKK ADPPAEKDLD LTVAPPSQQT RASISSQNAV  240
GVIQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538682.1_FGP214
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063310.0AK106331.1 Oryza sativa Japonica Group cDNA clone:002-101-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648291.11e-171transcription factor MYBS3-like isoform X1
TrEMBLA0A0P0XBW51e-170A0A0P0XBW5_ORYSJ; Os08g0151000 protein
STRINGOS08T0151000-001e-171(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-35MYB_related family protein