PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538682.1_FGP215
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 81aa    MW: 9303.47 Da    PI: 6.3344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538682.1_FGP215genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-101443130
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                       rg W++eEde+l+++++ +G g+W+ ++++
  KN538682.1_FGP215 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEK 43
                       789************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-14643IPR009057Homeodomain-like
PROSITE profilePS500907.039943IPR017877Myb-like domain
SuperFamilySSF466898.28E-91043IPR009057Homeodomain-like
PfamPF002497.6E-81443IPR001005SANT/Myb domain
CDDcd001672.11E-61743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAVHCNID LTIDNPVSDT  60
SHDKTDMKFP QKIIKGDSEV F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538682.1_FGP215
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118089e-68AK111808.1 Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence.
GenBankAK1121179e-68AK112117.1 Oryza sativa Japonica Group cDNA clone:002-129-C03, full insert sequence.
GenBankAP0044619e-68AP004461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0443G08.
GenBankAP0149649e-68AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126169e-68CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151107.12e-26PREDICTED: transcription factor MYB46-like
SwissprotQ9SPG35e-20MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A0C6WCT04e-25A0A0C6WCT0_9POAL; ScMYB7 protein
TrEMBLA0A453RYN43e-25A0A453RYN4_AEGTS; Uncharacterized protein
STRINGPavir.Fb00364.1.p8e-26(Panicum virgatum)
STRINGXP_010054774.12e-25(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-28myb domain protein 103
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]