PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538683.1_FGP074
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 363aa    MW: 40923.3 Da    PI: 9.7182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538683.1_FGP074genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.78e-174781898
                       --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +p +f  ++ ++++++  +++l d+sg++W+ +l  +  s+++++  GWkeFv++n ++ g f+vF++d+rs+f   v+vf+
  KN538683.1_FGP074  4 IPSSFN-QClQNQPTG--MVSLVDRSGNKWSAEL--TSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQF--SVTVFE 78
                       888887.554666655..8***************..*********************************99999..888876 PP
2B352.68.4e-17257348398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        ++++ s+v     + +p +f++e+   ++++k +tl d++g+ Wev++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v
  KN538683.1_FGP074 257 QIMMESYVYVGFFMNIPCEFVRECL--PRTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKV 344
                        6789999999**************5..345678***************995555556799*********************998444..578 PP

                        EEE- CS
                 B3  95 kvfr 98 
                        +++r
  KN538683.1_FGP074 345 HIYR 348
                        8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.0E-6180IPR003340B3 DNA binding domain
PROSITE profilePS5086315.495180IPR003340B3 DNA binding domain
SuperFamilySSF1019365.23E-20384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-18380IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-15477IPR003340B3 DNA binding domain
CDDcd100174.68E-15477No hitNo description
Gene3DG3DSA:2.40.330.107.4E-26247348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-25248348IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-24253348No hitNo description
SMARTSM010195.0E-15255350IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352255350IPR003340B3 DNA binding domain
PfamPF023625.9E-15257348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQKIPSSFNQ CLQNQPTGMV SLVDRSGNKW SAELTSDSEG FFFVHGWKEF VRDNSIQCGQ  60
FLVFTYDKRS QFSVTVFEPS GIDKISTFSA HPSKNVIIKT ESDEGGMVTA AITTEKMAPA  120
LKENNGITGK RTRDVDYLME DRVVVFKKSS EANVCESSRR KRAGASAGKS KVTSTSHNST  180
RGSSCSSDED NSSSKSPNPP FLMRFLSGEV SRRGRCVSKG QRQLTVISQR RPVTEAEKDH  240
ALQRAREFKS KNPFAVQIMM ESYVYVGFFM NIPCEFVREC LPRTNKRITL WDPQGKAWEV  300
NYVYYSDRSV GSFSGGWGKF AVGNNLEKFD VCVFELVQKD NIKVHIYRVV PEITPHKLRS  360
DPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1322834922142B3 domain-containing transcription factor VRN1
4i1k_B2e-1322834922142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538683.1_FGP074
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019410.0AK101941.1 Oryza sativa Japonica Group cDNA clone:J033074I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615373.10.0B3 domain-containing protein Os11g0197600
SwissprotQ2R9D20.0Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLB8BJK10.0B8BJK1_ORYSI; Uncharacterized protein
TrEMBLI1QYD80.0I1QYD8_ORYGL; Uncharacterized protein
STRINGORGLA11G0053000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]