PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538684.1_FGP113
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 210aa    MW: 21983.1 Da    PI: 6.3608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538684.1_FGP113genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-091544130
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                       +g W++eEd++l d++ ++G g+W++++++
  KN538684.1_FGP113 15 KGLWSPEEDQRLRDYIVKHGLGCWSAVPAK 44
                       678***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-71044IPR009057Homeodomain-like
PROSITE profilePS500906.2951041IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.9E-101445IPR009057Homeodomain-like
PfamPF002495.4E-71544IPR001005SANT/Myb domain
CDDcd001671.04E-41839No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI VKHGLGCWSA VPAKAAAAAE VTSMSTTEPP  60
SLHHHHHHQI KNSSGSTTTS HDQDANLSSG GSHGGISAPA PVAEPFDQQP KSFVFTGDWM  120
PMSAAAAGQE SYSISAQHWP ASTASSGNVT PSHGGAFGDQ MSGSYGALQQ QQHQSSAAAA  180
PMAGGGGYFD LLNMGDIYGG FAATSDDLLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538684.1_FGP113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040900.0AP004090.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1399_H05.
GenBankAP0048670.0AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624260.12e-85transcription factor MYB24
TrEMBLA2X0324e-89A2X032_ORYSI; Uncharacterized protein
STRINGOMERI02G00570.11e-116(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.17e-10myb domain protein 50