PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538686.1_FGP128
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 299aa    MW: 31679.9 Da    PI: 8.4822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538686.1_FGP128genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-06232257227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt lC ++ r G C  Gd C FaHg+
  KN538686.1_FGP128 232 KTILCEYYWRRGRCCEGDACDFAHGQ 257
                        899*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-10124161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7128161IPR000571Zinc finger, CCCH-type
SMARTSM003560.02130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.455130157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-10165201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7168201IPR000571Zinc finger, CCCH-type
SMARTSM003562.9169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.916169197IPR000571Zinc finger, CCCH-type
SMARTSM003560.028230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009230258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-7231262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9232262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.38269297IPR000571Zinc finger, CCCH-type
SMARTSM0035614270296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MADPNGHSRP PAGAPGRLKF GSASAGDAMI NSAGAPAGAH QYMTNPYAVD AMINSSALAG  60
AHPPMAAYST TFPAYGRARA PLFASHFALG ETSGVPGYLD QEEGFVGRHL GATTPSAMEL  120
GKEKPPRHLL RKTKLCGAYM GGYCAVGSHC DYAHGAHEIR AVVPHSSPYY KTEMCLTFTR  180
GEICLPSLNC PFAHAREELR QGPQQRHRTA PAAAAAHAGP SSTTAVAAGG IKTILCEYYW  240
RRGRCCEGDA CDFAHGQEDQ RLVPEMRVGG GGRPCLELAT KGWCKFGLNC KYFHGRAGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538686.1_FGP128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038291e-54AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0149631e-54AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-09C3H family protein