PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538686.1_FGP137

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 311aa MW: 34637.9 Da PI: 6.3409

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538686.1_FGP137	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.6	2.7e-13	48	73	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprl+WtpeLHerFveav+qLGG+e KN538686.1_FGP137 48 KPRLKWTPELHERFVEAVNQLGGPET 73 79*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-11	46	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-7	48	73	IPR006447	Myb domain, plants
Pfam	PF14379	2.7E-25	105	151	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MYHHQQQQLQ SHNQLLPSRQ SFPSERHLLM QGGSVSGESG LVLSTDAKPR LKWTPELHER 60 FVEAVNQLGG PETLVCTTAT EKPSEANGSP VSHLNLGTQT NKSVHIGEAL QMQIEVQRRL 120 HEQLEVQRHL QLRIEAQGKY LQSVLEKAQE TLAKQNAGSV GLETAKMELS ELVSKVSTEC 180 LQHAFSGFEE IESSQMLQGH TMHLGDGSVD SCLTACDGSQ KDQDILSISL SAQKGKEIGC 240 MSFDMHVKER GSEDLFLDKL NRRPSNHPER CERRGGFSMS CQTANLDLNM NDTYDGPKHC 300 KKFDLNGFSW A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538686.1_FGP137

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100282	0.0	AK100282.1 Oryza sativa Japonica Group cDNA clone:J023074M06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627784.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9FK47	8e-71	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A0D9Z6M5	0.0	A0A0D9Z6M5_9ORYZ; Uncharacterized protein
STRING	OGLUM03G15970.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	2e-62	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]