PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538687.1_FGP019
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 392aa    MW: 43718.7 Da    PI: 6.9247
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538687.1_FGP019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.5e-342579155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  KN538687.1_FGP019 25 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 79
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.3872282IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-322380IPR009057Homeodomain-like
SuperFamilySSF466897.88E-172480IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-232580IPR006447Myb domain, plants
PfamPF002497.2E-102778IPR001005SANT/Myb domain
PfamPF143792.6E-22126173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MERHLFLHGG NTQGDSGLVL STDAKPRLKW TPELHQRFVD AVNQLGGAEK ATPKTVMRLM  60
GIPGLTLYHL KSHLQKYRLS KNLHGQANVG TTKNALGCTG VADRIPGTSA LAMASASAIP  120
QAEKTIQIGE ALQMQIEVQR QLNEQLEVQR HLQLRIEAQG KYLQAVLEQA QETLGKQNLG  180
PASLEDAKIK ISELVSQVSN ECLSNAVTEI RESSSIHRLE PRQIQFVESS ANNCLTAAEG  240
FKEHRLQNHG VLKAYDDSTL FCRKQSQDQE SQYSLNRSLS ERRMGHLYSG KQYHKSEGSD  300
SDTEVLHEYI TPQKNGGGST TSSTSGSKEI NVEKLYLDEP SCKRQTVDYQ RESKLLDFDQ  360
QSSGKNLDLN THNIDDNDQG YRHFDLNGFS WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-202581157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538687.1_FGP019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413620.0AK241362.1 Oryza sativa Japonica Group cDNA, clone: J065151H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640413.10.0myb-related protein 2 isoform X1
RefseqXP_015640414.10.0myb-related protein 2 isoform X1
RefseqXP_015640415.10.0myb-related protein 2 isoform X1
TrEMBLA2Y5Y80.0A2Y5Y8_ORYSI; Uncharacterized protein
TrEMBLQ0DH730.0Q0DH73_ORYSJ; Os05g0488600 protein
STRINGOS05T0488600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.44e-96myb-related protein 1