PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538687.1_FGP060
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 192aa    MW: 20757.1 Da    PI: 7.0009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538687.1_FGP060genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-06811181254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  KN538687.1_FGP060  81 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 118
                        67788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.74469118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1279136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-679123No hitNo description
SMARTSM003530.006180124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-983127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MADEHEWWNS PCSARTGDDE AACSTAPADG GDESAPNAER LHHHQDAGSP APATRSSPGS  60
PAAAKKPRIE APSPMPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHD  120
QVASLSSPYL RCGRPVQLQH QQGSHKVNGN CEGKQLDLRS RGLCLVPVAS TYTVASETAT  180
EFWHPTFGGT FR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538687.1_FGP060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638164.11e-106transcription factor bHLH68 isoform X1
SwissprotQ8GXT32e-48BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D3G9G91e-106A0A0D3G9G9_9ORYZ; Uncharacterized protein
TrEMBLB8AZQ51e-108B8AZQ5_ORYSI; Uncharacterized protein
TrEMBLI1PX061e-106I1PX06_ORYGL; Uncharacterized protein
STRINGORGLA05G0190400.11e-107(Oryza glaberrima)
STRINGOBART05G21860.11e-107(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]