PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538687.1_FGP139
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 214aa    MW: 23908.2 Da    PI: 5.8929
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538687.1_FGP139genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.52e-1527562655
            G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        AtPk +l +m+v+g+t++hvkSHLQkYRl
  KN538687.1_FGP139 27 GATPKGVLTVMGVPGITIYHVKSHLQKYRL 56
                       69***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015576.1E-112657IPR006447Myb domain, plants
SuperFamilySSF466894.3E-62656IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-142657IPR009057Homeodomain-like
PfamPF143791.7E-2488134IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSIIGNCFEY CVVHMCLALL HANLSSGATP KGVLTVMGVP GITIYHVKSH LQKYRLAKYI  60
PESPAEGSKD EKKDSSDSLS NTDSAPGMQI NEALKMQMEV QKRLHEQLEV QRQLQLRIEA  120
QGKYLQMIIE EQQKLGGSLK ACEEQKLPHS PPSLDDYPDS MQPSPKKPKM DNLSPDSVRD  180
VTQSDFESHL IGPWDQEAAF RVDEFKADPG LNKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538687.1_FGP139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
GenBankCT8300690.0CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.11e-135myb family transcription factor PHL7
RefseqXP_015639153.11e-135myb family transcription factor PHL7
RefseqXP_015639154.11e-135myb family transcription factor PHL7
RefseqXP_015639155.11e-135myb family transcription factor PHL7
SwissprotQ9SJW05e-55PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0A1151e-133A0A0E0A115_9ORYZ; Uncharacterized protein
TrEMBLB8AZI41e-134B8AZI4_ORYSI; Uncharacterized protein
TrEMBLQ6F3351e-133Q6F335_ORYSJ; Os05g0491500 protein
STRINGOGLUM05G22410.11e-134(Oryza glumipatula)
STRINGOS05T0491500-021e-134(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-36G2-like family protein