PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538688.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 187aa    MW: 20523.6 Da    PI: 7.8316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538688.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.3e-143379354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  KN538688.1_FGP001 33 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 79
                       79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.0223079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-113379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1634100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1634101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-133685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-54382No hitNo description
CDDcd048732.91E-4117153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMMPPPFAPS PFGDLGRMTA QEIMDAKALA ASKSHSEAER RRRERINAHL ARLRSLLPNT  60
TKTDKASLLA EVIQHVKELK RQTSEITEEA CPLPTESDEL TVDASSDEDG RLVVRASLCC  120
DDRTDLLPDL IRALKALRLR ALKAEITTLG GRVKNYCFVC VNLGAVYLHG ISQQSIQGHT  180
LCSSGLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538688.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629966.21e-104LOW QUALITY PROTEIN: transcription factor bHLH30
SwissprotQ9S7Y12e-68BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0E0NSR31e-104A0A0E0NSR3_ORYRU; Uncharacterized protein
STRINGORUFI03G11650.11e-104(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]