PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538688.1_FGP195
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 184aa    MW: 19901.2 Da    PI: 4.2648
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538688.1_FGP195genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.12.6e-309215786149
               GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgs 149
                        ++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+   ++p+lRiT+  +
  KN538688.1_FGP195  92 DMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITAHID 157
                        79*************************************************666789*****9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.8661184IPR005202Transcription factor GRAS
PfamPF035149.1E-2892157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGG  60
HDLHGLIESM LCDDTLVGVD DGGQAGLHHA DDMSPYMKFG HFTANQAILE AVSGDRRVHI  120
VDYDIAEGIQ WASLMQAMTS RADGVPAPHL RITAHIDFVK RKLPWIQPNY LTHVGMNLIN  180
GYKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-169115384145GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538688.1_FGP195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352061e-138AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149591e-138AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630025.15e-46nodulation-signaling pathway 2 protein
TrEMBLA0A0D3FGJ03e-45A0A0D3FGJ0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CYD91e-44A0A0E0CYD9_9ORYZ; Uncharacterized protein
TrEMBLI1P9R41e-44I1P9R4_ORYGL; Uncharacterized protein
STRINGOMERI03G10770.12e-45(Oryza meridionalis)
STRINGORGLA03G0111000.12e-45(Oryza glaberrima)
STRINGOBART03G11490.14e-46(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-24GRAS family protein