PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538692.1_FGP039

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 155aa MW: 17323.7 Da PI: 8.1132

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538692.1_FGP039	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.4e-18	14	82	1	48
TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g W++Ia +++ gRt++++k++w+++l KN538692.1_FGP039 14 KGPWTPEEDEKLLHYIQKNGHGswrtlprlagtvlqspspnffrLWSAIATHLP-GRTDNEIKNFWNTHL 82 79**************************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.638	9	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-24	12	83	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-15	13	84	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-16	14	82	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.28E-14	14	83	IPR009057	Homeodomain-like
CDD	cd00167	1.49E-13	16	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLLHYIQ KNGHGSWRTL PRLAGTVLQS PSPNFFRLWS 60 AIATHLPGRT DNEIKNFWNT HLKKRLIQMG FDPMTHRPRT DFFAALPQLI ALATLRDQLA 120 ATAATASASS CGGGASSPFP WPEFFHDDPF ITDFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538692.1_FGP039

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004376	1e-104	AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBank	AP014964	1e-104	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-104	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695646.1	9e-72	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	6e-55	MYB93_ARATH; Transcription factor MYB93
TrEMBL	B8BBV7	3e-81	B8BBV7_ORYSI; Uncharacterized protein
STRING	Pavir.Fb01820.1.p	7e-67	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	8e-52	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]