PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538693.1_FGP093
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 172aa    MW: 18483.9 Da    PI: 8.2167
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538693.1_FGP093genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY152.15.2e-47121666169
              YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                          e++ yvqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls  ++     ++a    + +l++++++el       +  +e++   ++ + 
  KN538693.1_FGP093  12 LRERLGYVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-AVNLPPSPVSA----SIELTPQMKQELDAGPPPGEYSDESSGDDREGRD 98 
                        5799**************************************.33333333333....3456777778877777666555555444444333 PP

              YABBY  98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                        +     ++d  +p +   +++PP ++qr Psayn+f+keei+rik+  P+i+h++afs+aaknWah+P+i  +
  KN538693.1_FGP093  99 A-----EDDAPAPAAAAvANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQK 166
                        3.....4444444444438**************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-4913165IPR006780YABBY protein
SuperFamilySSF470951.02E-7109162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.0E-5114165IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSSAARHHCS GLRERLGYVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS  60
PVSASIELTP QMKQELDAGP PPGEYSDESS GDDREGRDAE DDAPAPAAAA VANKPPGRKQ  120
RTPSAYNCFV KEEIKRIKSM EPNITHKQAF STAAKNWAHL PRIQQKRGRD SC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538693.1_FGP093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740190.0AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647119.11e-102protein YABBY 7 isoform X2
SwissprotA2PZN81e-103YAB7_ORYSJ; Protein YABBY 7
TrEMBLI1QEG01e-101I1QEG0_ORYGL; Uncharacterized protein
STRINGORGLA07G0250200.11e-101(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136252831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-28YABBY family protein