PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538695.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 174aa MW: 19545.2 Da PI: 9.8242

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538695.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.7	2.3e-53	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL+ ++++ ++++ +i++vdiyk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ KN538695.1_FGP006 12 LPPGFRFHPTDEELILHYLRSRATAGQCPV-PIIADVDIYKFDPWDLPSKAVYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPI 102 79**************************.88***********77667899********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl KN538695.1_FGP006 103 HDSaTGESVGVKKALVFYRGRPPKGTKTSWIMHEYRL 139 9988999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-61	3	144	IPR003441	NAC domain
PROSITE profile	PS51005	55.39	12	165	IPR003441	NAC domain
Pfam	PF02365	6.2E-28	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEMTMSSAAT SLPPGFRFHP TDEELILHYL RSRATAGQCP VPIIADVDIY KFDPWDLPSK 60 AVYGESEWYF FSPRDRKYPN GIRPNRAAGS GYWKATGTDK PIHDSATGES VGVKKALVFY 120 RGRPPKGTKT SWIMHEYRLA ADPLAAAANT YKPSSSSRFR NVSMRSIIII PREE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-66	6	139	9	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538695.1_FGP006

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829369	0.0	CT829369.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA056N06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647490.1	1e-119	NAC transcription factor 29
Swissprot	Q8H4S4	1e-71	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A0E0QCV3	1e-117	A0A0E0QCV3_ORYRU; Uncharacterized protein
TrEMBL	I1QDA4	1e-117	I1QDA4_ORYGL; Uncharacterized protein
STRING	ORUFI07G27590.1	1e-118	(Oryza rufipogon)
STRING	ORGLA07G0209600.1	1e-118	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-71	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]