PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538695.1_FGP017

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 349aa MW: 38776 Da PI: 6.7953

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538695.1_FGP017	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5e-34	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl KN538695.1_FGP017 52 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.694	49	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-32	50	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-17	51	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	52	107	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-10	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-25	155	201	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MTGTEQMMYH QQQVQSDSQH LSSRPGLPPE KQFLLQGGAD SSSGLVLSTD AKPRLKWTSE 60 LHERFVEAVN QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QSQANASRAQ 120 GDLGCSTTEI DKPCEGNGSP ASHLDLETQT NSSSMHINEA LQMQIEVQRR LHEQLEVQRH 180 LQLRIEAQGK YLQSVLEKAQ EALGTIAVAE TAATANDASS KRLQNEHTQL HHHQQQQQVG 240 DGSVDSCLTA CDCEGSHHSR SHGHRGEQDI LSIGLPPFEP AAARSGKDDM EHHYLLFPNE 300 PSRRRSCSDE RRREMSTLQA SELDLSINGR SSSHSHRREN IDLNGASWS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MTGTEQMMYH QQQVQSDSQH LSSRPGLPPE KQFLLQGGAD SSSGLVLSTD AKPRLKWTSE  60
LHERFVEAVN QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QSQANASRAQ  120
GDLGCSTTEI DKPCEGNGSP ASHLDLETQT NSSSMHINEA LQMQIEVQRR LHEQLEVQRH  180
LQLRIEAQGK YLQSVLEKAQ EALGTIAVAE TAATANDASS KRLQNEHTQL HHHQQQQQVG  240
DGSVDSCLTA CDCEGSHHSR SHGHRGEQDI LSIGLPPFEP AAARSGKDDM EHHYLLFPNE  300
PSRRRSCSDE RRREMSTLQA SELDLSINGR SSSHSHRREN IDLNGASWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538695.1_FGP017

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067645	0.0	AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646569.1	0.0	myb-related protein 1 isoform X1
Swissprot	Q9FK47	2e-78	PHLA_ARATH; Myb-related protein 1
TrEMBL	B8B646	0.0	B8B646_ORYSI; Uncharacterized protein
STRING	ORUFI07G27670.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	3e-77	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]