PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538698.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 202aa    MW: 22641.5 Da    PI: 9.9657
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538698.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.37e-081341711754
                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                        A+rsR RK+++i+eLe+kv++L++e  +   e+e l++
  KN538698.1_FGP010 134 AQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQ 171
                        99**********************98777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-4121182IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.75E-7130175No hitNo description
CDDcd147033.20E-14130174No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-7134176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGGGGGGQAA PWGGVQEYYA KPSSFGRHQG RPWEQGMNNL VNYRQSGGPP MPAKEKVGGH  60
HGSPSVLRDH DHGMDRRSSD ESGHDQKVGP ERKEGVPPKH AQSEADTKRA KQICNLNMLL  120
EALVWSSSIN QQYAQRSRVR KLQYIAELER KVQALQSEGI DVSAEMEFLS QQNIMLDLEN  180
KALKQRLESL AQEQLIKRFR KK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538698.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235170.0AC123517.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence.
GenBankAC1379890.0AC137989.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0050G15, complete sequence.
GenBankAK0722670.0AK072267.1 Oryza sativa Japonica Group cDNA clone:J023004I18, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662832.21e-113PREDICTED: uncharacterized protein At4g06598-like
TrEMBLA3C9S21e-118A3C9S2_ORYSJ; Uncharacterized protein
STRINGOB11G15450.11e-112(Oryza brachyantha)
STRINGOBART11G06850.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33103666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.23e-28bZIP family protein