PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538699.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 362aa    MW: 40896.3 Da    PI: 4.3218
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538699.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.11.3e-13109353128
                NAM  53 aeekewyfFskrdkkyat.gkrknra.....tksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +e++wyfF+ r+ ++++ ++++nr+     +++g W+atg+  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  KN538699.1_FGP010  10 YGEDRWYFFMVREPSKTKkKDESNRKvvvdgVEEGSWSATGSVVQIHSTkeanRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 93 
                        46779****9998776652678888656666679*************9866656666*********9..5666669********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.8391110IPR003441NAC domain
SuperFamilySSF1019414.97E-149110IPR003441NAC domain
PfamPF023654.1E-71493IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNALEKYKGY GEDRWYFFMV REPSKTKKKD ESNRKVVVDG VEEGSWSATG SVVQIHSTKE  60
ANRKAIIGSK RVLTYKSARS AENDMWSMHE YVLAGKSQMG QYVLCAIQLK QTYEREEKAR  120
EEQKNDNKHN KKAARMKNMQ QQPTISQAQD EQQETSPTPG EETINVDPDQ FMDIAHSMHM  180
MFGGVDQDAP PFMPSLIAPF NNDDGMLQLQ PLQLQNPNPE MIYSNQLEPS YIGDQSMFTP  240
YCCDGNCISC RQLQFYQQQQ AEDGSTVAFG EADLYQQHDR ALGDTGVYPD NIWVDGNMAD  300
YAQRQIYNDQ DNGGVLMQGP EDSATFPDNF LMLGEMAAGS DDVPGFDYEV DQSMAVVPHV  360
AD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538699.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235260.0AC123526.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankBX0004990.0BX000499.1 Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0F2I90.0A0A0E0F2I9_9ORYZ; Uncharacterized protein
STRINGOMERI11G02660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.12e-10NAC family protein