PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538699.1_FGP079
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 140aa    MW: 15595.7 Da    PI: 8.4556
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538699.1_FGP079genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.4e-181988267
                NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkk 67
                       +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L +    + + ++++w+fF++r+++
  KN538699.1_FGP079 19 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAER 88
                       69***************************99***************84455333335569******9876 PP
2NAM362.1e-118711996128
                NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++e++g+k+t+vfy+grap+g+kt+W m+ey++
  KN538699.1_FGP079  87 EREVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 119
                        5688***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-3215125IPR003441NAC domain
PROSITE profilePS5100519.88518140IPR003441NAC domain
PfamPF023651.8E-1520118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSTTRSGSGG GAINDPFATP GFRFYPTEEE LLGFYLRHRL AGTRPDVERV IPVVDVYGYH  60
PSQLAAVAGE ASARDTEQWF FFCPRAEREV IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV  120
ADDADAAAML HPMAPPRVHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1411181139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538699.1_FGP079
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-120CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615861.17e-76NAC domain-containing protein 90
SwissprotQ9FMR32e-35NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0BFG76e-82A0A0E0BFG7_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03170.11e-82(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.11e-35NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]