PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538700.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 767aa    MW: 86765.6 Da    PI: 7.436
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538700.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11751e-54151331118
               CG-1   1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                        l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n
  KN538700.1_FGP001  15 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKN 106
                        567889************************************************************************************** PP

               CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                        +tfqrr+yw+L+ ++++iv+vhy++v+
  KN538700.1_FGP001 107 STFQRRIYWMLDPAYDHIVFVHYRDVQ 133
                        ************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.93212138IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-6915133IPR005559CG-1 DNA-binding domain
PfamPF038599.2E-4919132IPR005559CG-1 DNA-binding domain
CDDcd002042.57E-11406528No hitNo description
PfamPF136371.3E-9438490No hitNo description
SuperFamilySSF484031.07E-15440531IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-16441533IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.255441501IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.541469501IPR002110Ankyrin repeat
SMARTSM002481.9E-4469498IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-6587680IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.012630652IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181631660IPR000048IQ motif, EF-hand binding site
SMARTSM000150.83653675IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169654682IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MQHQQQQQGF DTHRLHQEVK SRWLKPKEVL QILQNHDRFI ITHKTPHKPP SGAWFLFNRR  60
VLRYFRNDGY EWRKKKNGKT IAEAHERLKV DNVDALNCYY AHADKNSTFQ RRIYWMLDPA  120
YDHIVFVHYR DVQEGSISVS ALNDSSTSNQ NGSGSRAEAQ SSPGLTSELF APCLNSCSPG  180
SAEEVSSQIM AINNETNSVS QPDWVQHCNQ AALRKLKVQL SLEDREDHDV DAKDIPSNSE  240
PITVYGIQNE EPGTCRNLAD VFSGLEFSKE NHPEETGLPF SSTIDVLKNS DTWLEEDQIE  300
AILQSASMTV TENQWFNIRE VSPEWSYCSE SIKVIIAGDF LRDPSHGSWA IVFGDVKLLF  360
DGHVSEQFLK FGLPFPNLEC RLQVSSSEIM KGTSEQLNRD TAVNCVMEVL LNNKFEEWLL  420
SKYEQNSEGN HFLPRQYHGV IHTIAALGYN WALKLLLNSG VLVNYRDANG WTALHWAARF  480
GREETVVLLL DAGAAAGALS DPTAQDPAAK TPASVASAYG FKGLSAYLSE AELTAHLHSL  540
ESKENGSSGD QISRVVNRIS DTSSHAQSGS DDQLALKESL GAMRYAVQAA GRIQTAFRIF  600
SFRKKQQAGL QNRGNHIISI REVGAASRGM LEKAALSIQK NFRCWKKRKE FLKIRKNVIK  660
IQARVRAHQQ HNKYKELLRS VGILEKVMLR WYRKGVGLRG FHPGAIAMPI DEEDEDDIAK  720
VFRKQRVETA LNEAVSRVSS IIDSPVARQQ YRRMLEMHKQ NKDDDEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538700.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649554.10.0calmodulin-binding transcription activator 4 isoform X1
RefseqXP_015649561.10.0calmodulin-binding transcription activator 4 isoform X2
TrEMBLA0A0E0CCC50.0A0A0E0CCC5_9ORYZ; Uncharacterized protein
STRINGTRIUR3_22499-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.16e-80Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains