PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538700.1_FGP087

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 261aa MW: 27967.2 Da PI: 8.3968

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538700.1_FGP087	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	100.6	1.3e-31	16	71	23	78
--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 23 vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 vCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+ KN538700.1_FGP087 16 VCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 71 9****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	23.17	1	69	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-28	15	74	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.5E-20	16	56	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-23	16	68	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDWDAKMPSW DLGTVVCEAH SKTAVVTVAG QQQRFCQQCS RFHLLGEFDE EKRSCRKRLD 60 GHNKRRRKPQ PDPLNPGNLF ANHHGAARFT SYPQIFSTAA SMSPQEAKWP ANVVKTEAAD 120 VFQEPYYHAL HLNGAGAAAA ASIFHHGGNK ARKHHFPFLT TDHGDGAAAA PPLFGCQPFT 180 ITPSSESRSS SSSRHSNGKM FAHDGGLDNC ALSLLSDNPT PTAQITIPQP LVAGAGGGQY 240 GGGDVSLTGL SYVRMAGKDT G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-18	16	68	32	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	68	KRSCRKRLDGHNKRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538700.1_FGP087

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK062581	0.0	AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611358.1	1e-145	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	1e-146	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	I1NUS7	1e-149	I1NUS7_ORYGL; Uncharacterized protein
STRING	ORGLA01G0361700.1	1e-150	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-20	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]