PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538701.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 751aa    MW: 87490.3 Da    PI: 6.9091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538701.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.72.5e-281713083127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkev 92 
                        pG+rF P+d el+ ++L++k++g++l+  + ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++v
  KN538701.1_FGP009 171 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAV 262
                        9***************************999**************9655541556********************66538************ PP

                NAM  93 lsk..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                        l++  ++ l+g k  L+++         k +++++ kt W m e+ 
  KN538701.1_FGP009 263 LDAlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 308
                        *99888889**********8887777766899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.251169336IPR003441NAC domain
SuperFamilySSF1019417.72E-37169336IPR003441NAC domain
PfamPF023654.5E-14171308IPR003441NAC domain
PfamPF030161.6E-70386659IPR004263Exostosin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005794Cellular ComponentGolgi apparatus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAGSARPE EENLENLEQP LPLLMPSSED HREQQLVPVP  60
WLQQDQDLEW HEQEQFLLLP WLQHNKKQLQ NQEQLQRDQE WQGQLLPLQN QDQELDQELQ  120
NQEQQDQEWH TQEQFLPLKN QNQEQLQDQQ PLQDQQPLQD QEETRRYLGV PGIRFVPSDI  180
ELILDFLRPK LRGEQLPSYS YMHVCDVYSD HPKELTSKLG PSREGNWYMF SPRNRKYNKG  240
KRPSRSTGQL GFWKSTTKNE AVLDALSDNM LIGYKACLTY HEYDESMPTP KLKKENAIKT  300
PWKMWEFVCS NSNRPFDAEE EPMRLNDWVL CKVTNKDNKV TTKKFKPQRS KKPKKLQQEE  360
QPQNQGIVIR QPESYRETSN LTSNGSPVHR LVEQHSIDYW LWADLIAPES QRLLKNVIRV  420
RCQEEADIFY VPFFTTISYF LLEKQECKAL YREALKWVTD QPAWQRSEGR DHVIPVHHPW  480
SFKSVRRFVK KAIWLLPDMD STGNWYKPGQ VYLEKDVILP YVPNVDLCDS KCVSETQSRR  540
STLLFFRGRL RRNAGGKIRS KLVTELKDAE GIIIEEGTAG ADGKAAAQNG MRKSLFCLNP  600
AGDTPSSARL FDAIVSGCIP VIVSDELELP FEGILDYRKI ALFVSSSDAV QPGWLVKYLR  660
SIDAKRIREM QSNLLKYSRH FLYSSPARPL GPEDLTWRMI AGKLVNIKLH IRRSQRVVRE  720
SRSICSVPNP VMIETFYSDC MTPHVKEQDV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-1617133917171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538701.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764590.0AK376459.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124K22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ5VQN00.0Q5VQN0_ORYSJ; Exostosin family protein-like
STRINGORUFI01G38000.10.0(Oryza rufipogon)
STRINGONIVA01G39650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP811822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-20NAC domain containing protein 47