PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538703.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 173aa    MW: 18932.3 Da    PI: 6.2856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538703.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-124392455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        h +rEr RR+r+ ++++ L+ +lP+ a   +s K  K +i+  A +YI++L+
  KN538703.1_FGP010 43 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 92
                       599***********************88...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-1538109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4273991IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1141108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-94392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-84597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MHRFLRSIYD DAGDDAGATA EMQPAEGEQQ QAAPSGGGSA RFRHIMRERL RRERLSQGYA  60
DLQAILPTGA SSSKGGKNTI VAAAANYIRE LEGRKGWLHA QNELLERTTP RPGAGMVVKV  120
RAESELGSTV DVFEAVLRRL KAMDELQVTA IQSWFGAGGM WMDVAVESKE KED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538703.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032651e-151AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBankAP0149571e-151AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-151CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635057.11e-107transcription factor BHLH148-like
TrEMBLA0A0D9YFN11e-108A0A0D9YFN1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G36910.11e-109(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432