PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538704.1_FGP041
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 162aa    MW: 17601.3 Da    PI: 9.5139
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538704.1_FGP041genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like41.13.9e-1367922651
            G2-like 26 kAtPktilelmkvkgLtlehvkSHLQ 51
                        AtPk++lelm+vk+Ltl+hvkSHLQ
  KN538704.1_FGP041 67 GATPKSVLELMNVKDLTLAHVKSHLQ 92
                       59************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-116793IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-96795IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MELTTTGILM KEEVVGQNRR GMMTRPLVHG AGGQRYMGRP TQAPIMEAGG GSGRWPSLSS  60
IQECNRGATP KSVLELMNVK DLTLAHVKSH LQATYLLDLV QMYRTVKGTT DRTCAEGHGQ  120
MRDMGFLRRG GGGVDGFDVL GNTSSIAIAN IRLVYSTLYL VD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538704.1_FGP041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927805e-99AC092780.6 Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence.
GenBankAP0149595e-99AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690532.14e-39PREDICTED: two-component response regulator ARR1-like
TrEMBLC7J0372e-51C7J037_ORYSJ; Os03g0624000 protein
TrEMBLQ75LF66e-53Q75LF6_ORYSJ; Putative transfactor
STRINGOB03G34420.14e-43(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-14G2-like family protein