PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538706.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 789aa    MW: 87000.2 Da    PI: 8.1425
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538706.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.3e-15492531241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        ++k+C+CkkskClk+YCeCfa++++Cse+C+C +C+N+++
  KN538706.1_FGP005 492 SCKRCSCKKSKCLKLYCECFASKVYCSESCSCRGCFNDHS 531
                        689**********************************987 PP
2TCR49.11.1e-15577615139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCk+s C+kkYCeCf++g+ Cs +C+Ce+CkN+
  KN538706.1_FGP005 577 RHKRGCNCKRSYCVKKYCECFQSGVGCSMSCRCENCKNS 615
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.8E-16491532IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.816492617IPR005172CRC domain
PfamPF036381.2E-10494529IPR005172CRC domain
SMARTSM011147.8E-15577618IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-11579615IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MELSGLASSI RVDREWCWSL SSILRQWLGS EANKEDARGG GRFGVVATTC EVIVVVGCMK  60
EMSAGQFYCK GEERVDGGAG VKRRGAPQKE GVGGETKSPK KVEGKTYKYK GFVIEGCELD  120
STIIMIKSSD LVHIPSIFTS PEVNSQKGSK TSICIDRSLS QAYHDSPDNA SILPTNLARR  180
IQLSSDTLGS DKRHGIAGKT DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH  240
NDEITACDWD YLGTQYDSSV VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS  300
RRKLFQGSAD CYSQSAVDSI HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV  360
PSDYMAMNPS AVSQHLRGLH RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS  420
KLVGSPVCAL PNVDLHLVRM TEEMLAPNTS EMNTYNQGDY SSQATMPTSA GNSGQENPKR  480
KRQKCQNGNV DSCKRCSCKK SKCLKLYCEC FASKVYCSES CSCRGCFNDH SHEETVLSTR  540
NRIESRNPLA FAPKVIRTCG PGLEFGEDSN ATPASSRHKR GCNCKRSYCV KKYCECFQSG  600
VGCSMSCRCE NCKNSFGVRK GIERFETKEI ERADRKMKDH PKEEQSEMDK YHALCEIWGV  660
RSTENLFTTP SMDSRRAFAL FPSECPKSSL ASSTRTSSHL HSPTRTDVLL SPFGSYTQML  720
LGNEASDMLL QQGDSSCTAS LRIASPNKKR VSPLRTGNTL SPTCRKELGL KSIIPPFPSL  780
TGDANSELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1449461412120Protein lin-54 homolog
5fd3_B4e-1449461412120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538706.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427500.0AK242750.1 Oryza sativa Japonica Group cDNA, clone: J090050H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879709.10.0protein tesmin/TSO1-like CXC 2
TrEMBLQ10G990.0Q10G99_ORYSJ; Tesmin/TSO1-like CXC domain containing protein, expressed
STRINGORGLA03G0251700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-46TESMIN/TSO1-like CXC 2