PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538708.1_FGP091
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 407aa    MW: 43334.8 Da    PI: 7.937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538708.1_FGP091genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-124266327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C ++++tGtCk+G +Ck++H++
  KN538708.1_FGP091 42 QPICEYYMKTGTCKFGTNCKYHHPK 66
                       799********************96 PP
2zf-CCCH38.61.8e-1286111227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG+Ck+G +CkF+H++
  KN538708.1_FGP091  86 GEKECSYYMKTGQCKFGTTCKFHHPE 111
                        7899********************96 PP
3zf-CCCH38.61.8e-12239265127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++++rtG Ck+G++Ck++H++
  KN538708.1_FGP091 239 PGQPDCQYYMRTGDCKFGATCKYHHPR 265
                        5789*********************96 PP
4zf-CCCH32.21.8e-10288311427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C ++a++G+C+yG  Ck+ H++
  KN538708.1_FGP091 288 QPCAYYAQNGYCRYGVACKYDHPM 311
                        69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.7883967IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-63966IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-74268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-64468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.37184112IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-684111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-686111IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-986111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-490110IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497238266IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10240265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5243266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5244267IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892284312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6285314IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8288311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5288309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTANKGRCGG WGWEAEAGEV EEEFGGGARN AAALDYPERA GQPICEYYMK TGTCKFGTNC  60
KYHHPKQDGA VLPVMLNNSG FPIRPGEKEC SYYMKTGQCK FGTTCKFHHP EFGGVPMTPG  120
IYPPLQSPSI ASPHPYASLA NWQMGRPPVV PGSYIPGSYT PMMLSSGMIP LQGWSPYPAS  180
VNPVVSGGAQ QNVQAGPVYG MGHHGSSSTI AYGGPYVPYA SSTGQSSNNQ QEHGFPERPG  240
QPDCQYYMRT GDCKFGATCK YHHPRELSAP KSGYMVNSLC LPLRPGAQPC AYYAQNGYCR  300
YGVACKYDHP MGTLGYSPSA LPLSDMPIAP YPIGFSIATL APSSPSPDLR PEYISTKDQS  360
VNQVTSPVAA SEPVGSILPK GVFPADTMMR AQTNTTSGGS SSPGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538708.1_FGP091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116330.0AK111633.1 Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0D3ELY50.0A0A0D3ELY5_9ORYZ; Uncharacterized protein
STRINGOMERI01G09890.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-101C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]