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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | KN538711.1_FGP056 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | C3H | ||||||||
| Protein Properties | Length: 2993aa MW: 333334 Da PI: 6.4575 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 17.5 | 7.2e-06 | 2238 | 2259 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C +f++ G C GdrC F H
KN538711.1_FGP056 2238 VPCYYFQK-GMCVKGDRCAFLHL 2259
69******.*************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF14222 | 5.3E-98 | 175 | 648 | IPR025614 | Cell morphogenesis protein N-terminal |
| SuperFamily | SSF48371 | 4.22E-9 | 361 | 643 | IPR016024 | Armadillo-type fold |
| Gene3D | G3DSA:1.25.10.10 | 9.2E-5 | 379 | 446 | IPR011989 | Armadillo-like helical |
| Gene3D | G3DSA:1.25.10.10 | 9.2E-5 | 558 | 634 | IPR011989 | Armadillo-like helical |
| Pfam | PF14228 | 0 | 686 | 1811 | IPR029473 | Cell morphogenesis central region |
| Gene3D | G3DSA:1.25.10.10 | 9.2E-5 | 699 | 722 | IPR011989 | Armadillo-like helical |
| SuperFamily | SSF48371 | 4.22E-9 | 700 | 726 | IPR016024 | Armadillo-type fold |
| SuperFamily | SSF48371 | 4.22E-9 | 754 | 813 | IPR016024 | Armadillo-type fold |
| SuperFamily | SSF48371 | 2.09E-9 | 1213 | 1266 | IPR016024 | Armadillo-type fold |
| Gene3D | G3DSA:1.25.10.10 | 9.2E-5 | 1232 | 1264 | IPR011989 | Armadillo-like helical |
| SuperFamily | SSF48371 | 2.09E-9 | 1305 | 1409 | IPR016024 | Armadillo-type fold |
| Gene3D | G3DSA:1.25.10.10 | 9.2E-5 | 1439 | 1461 | IPR011989 | Armadillo-like helical |
| SuperFamily | SSF48371 | 2.09E-9 | 1619 | 1724 | IPR016024 | Armadillo-type fold |
| SuperFamily | SSF48371 | 2.09E-9 | 1770 | 1871 | IPR016024 | Armadillo-type fold |
| Pfam | PF14225 | 3.3E-80 | 1836 | 2124 | IPR025481 | Cell morphogenesis protein C-terminal |
| SuperFamily | SSF48371 | 2.09E-9 | 1921 | 2125 | IPR016024 | Armadillo-type fold |
| PROSITE profile | PS50103 | 13.554 | 2234 | 2261 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.5E-5 | 2235 | 2260 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005886 | Cellular Component | plasma membrane | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2993 aa Download sequence Send to blast |
MGAGGAAKQI VDSLLARFLP LARRRIETAQ AQVHHLFQPL RPRDFPPYPM FKVQLLYAAA 60 SISAPNHCHP TIVITATSFY MKLPPHACPF EFDLLVLRHA HIVGKCSKSY STFDGLVTSH 120 DGQYLRPSDP SYEQVLDSLA MVARHTPLPL LEALLRWRES ESPKGAHDAS TFQKKKLWIG 180 LENFVFDWLI NADRVVSQVE YPSLVDLRGL LLDLVAQLLG ALSRIRFSSV TERFFMELNS 240 RRNDAPLSRS DSLSIINGMR YLKLGVKTEG GLNASVSFIA KANPLNRPPN KRKSELQHAL 300 CNMLSSILAP LAEGGKHHWP PLGVEPALSL WYDAVARIRG ALMYWMDKQS KHIAVGFPLV 360 TLLLCLGDSH MFNTHFSQHM EILYKYLKDK NHRSMALDCL HRLVKFYLNV YADYQPRNHV 420 WDCLDSVTSQ LLTVLKKGLL TQDVQHDKLV EFCVTLAESN LDFAMNHMIL ELLKPDSLSE 480 AKVVGLRALL EIVVSPSNKQ IGLDVFQEYG IGHYIPKVKS AIESILRSCN KSYSLALLTS 540 SKATIDNVTK DKSQGSLFRS VLKCIPYLIE EVGRNDKMTE IIPQHGISID PGVREEAVQV 600 LNRIVRCLPN RRFAVLKGMA NFILKLPDEF PLLIQTSLGR LVELMRLWRV CLSEELLAKD 660 MQNVKRSSLG GDALQRSPFH RSRDVSEFRA SEMDAVGLVF LSSADVQIRL TALELLRCVR 720 ALKNELRDYS ANEWGDSKLK LEPEPIFIID IIEENGEDIV QSCYWDPGRP YDLRREMDPV 780 PLDVTLQSIL ESADKSRWAR YLSEIVKYAA ELCPSSVQDA RQGLWGLEVV RRLEQITPVE 840 LGGKAQQSQD TETKLDQWLI YAMFACSCPP DSREEFALRA AREIFHMVFP SLRHGSESYA 900 LAATAALGHS HLEVCEIMFG ELTSFLEDVS SETEAKPKWK PLYTIFHKKN PRSRREDLRT 960 HVANIHRMIA EKIWPGMLSR KPVLRLHFLR FIDETCRQIL PPSDNFQDLQ PLRYALASVL 1020 RYLAPEFIDA KSERFDSRLR KRLFDLLLSW SDDSGSTWGQ EGNSDYRREI ERYKASQHNR 1080 SRESLDKLAF DREMAEQLEA INWASMNAIA SLLYGPCFDD NARKLSGRVI SWINSLFMEL 1140 APRAPFGHSP VDPRTPSYSK HTDGGRFGGR DKQKTSHLRV LLAKTALKNI LQTNLDLFPA 1200 CIDQCYSPDS PISDGYFSVL AEVYMRQEIP KCEIQRILSL ILYKVVDQTK LIRDSALQML 1260 ETLSLREWAE DDADGVGHYR ASVVGNLPDS YQQFQYKLSS KLAKDHPELS EHLCEEIMQR 1320 QLDAVDIIAQ HQVLTCMAPW IENLNFVRLK ESGWSERLLK SLYYVTWKHG DQFPDEIEKL 1380 WSTVASNTRN IIPVLNFLIT RGIEDCDANP SAEITGAFAT YFSVAKRVSL YLARICPQQT 1440 IDHLVCELSQ RMLEDDEEPV RPGKVDTSAN VVLEFSQGPS TSQVATIVDS QPHMSPLLVR 1500 GSLDGAIRNV SGNLSWRTSA VTGRSVSGPL SPLAPEVSIP NPTTGRSGQL LPALMNMSGP 1560 LIGVRSSAGN LRSRHVSRDS GDYYLDTPNS NDDILHQGGS GVHGINANEL QSALQGHQHL 1620 LSRADIALIL LAEIAYENDE DFRENLPLLF HVTCVSMDSS EDIVLEHCQD LLVNLLYSLA 1680 GRHLELYEVE SSERENKQHV VSLIKYIQSK RGSLMWENED PTLVRTELPS ASLLSALVQS 1740 MVSAIFFQGD LRETWGSEAL KWAMECTSRH LACRSHQIYR ALRPSVKSDS CVLLMRCIHR 1800 CLGNPVPAVL GFAMEILLTL QVMVENMEPE KVILYPQLFW GCVALMHTDY VHIYCQVLEL 1860 FCRVIDRLTF RDRTTENVLL SSMPRDEFDI NGYTSDLHRL ESRTTSERLL SVTETGKVPD 1920 FEGVQPLVLK GLMSSVSHGS AIEVLSRITI PTCDSIFGSP ETRLLMHITG LLPWLGLQLT 1980 KDASSLGSSS PIQEQNQKAY YVASNISVWC RVKSLDDLAE VFRAYSFGEI ISLEDLFARA 2040 SPPICSEWFP KHSSLAFGHL LRLLERGPLD YQRVVLLMLK SLLQQTPVDP SQIPQVYNVV 2100 SQLVESALCA EALNVLEALL RSCSGVTGGQ GFGTLMGQGG GSAADTGVAT RDVALQNTRL 2160 LLGRVLDTCA LGRKRDHKRL VPFVANIGAT AKHADTPLDG LVGAPTTPRT SQQSAPQVSV 2220 PAQAPVPNPA SGTAKQGVPC YYFQKGMCVK GDRCAFLHLP QATGSPAPQH TTKVFAPASV 2280 PHPQLKNSWT KPNSSAQQNA PPAIFDKPKD SAHNGKTAQK QNLTNRAGHL SGIIHDKKGS 2340 YMPSGVTKNY RPPPSTGDDL AENGVEMGEF VREPSAGSDV LTGGADDNAE QSLREDRGAY 2400 HRTNGEQHIG MLRQTHDSYG FERSHRGSAE KLLSESRVSL REPMPLTADS SDLRQRLLKQ 2460 RRLNNPRSGQ VSDRHNVYPE DERHDRHRRR GEELASHDGV SSSRLRGRIR LPAETTFDRL 2520 GLQPEKERDR GPRARLSPPS QTDLRGKLHD RLKAKPNEDV SGNVKSSLAK ANEDAESLNF 2580 AGPKSLAELK AKKVAGSLMK SSRSLAGPVR MTSEIVTIKD SSDPVLFDGP KPLNAILKRK 2640 READSGNATD FGSKQEEHSG GDEEGSQNDF QNIEDDIVGT NTEGNGEEAF QPEDDVVYGD 2700 SLSPADDIVA EAADDASREL EEQQDVETAE EYDYEMDDVN AAEDENDYQE YEDEDDDLED 2760 DDDFARKWLQ QVFERPSPLN ILGLLFLCVA AAAAGVEVFA AAKAETFAGG TAQGIERDLQ 2820 RRSFGLFFFK YRAEINHIRF LYSVFGHALS KGKRKGKERL PIATEGDDSA DDAVEAKAAA 2880 APGNVEGDEH RGVVVLGTGK VGGGEDEDSH GGGARPRVSG GEVAKAEALQ CGGVLEVVNR 2940 RVPPSTVKKS SAAAAAHGEW ERLGEGCGRK KKEQGPWAES FSTAQGTCRG PCK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KN538711.1_FGP056 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP004082 | 0.0 | AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12. | |||
| GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
| GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015625723.1 | 0.0 | protein furry | ||||
| TrEMBL | A2XBB1 | 0.0 | A2XBB1_ORYSI; Uncharacterized protein | ||||
| STRING | ORGLA02G0335700.1 | 0.0 | (Oryza glaberrima) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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