PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538712.1_FGP017

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 437aa MW: 49956.9 Da PI: 6.4791

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538712.1_FGP017	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85	9.3e-27	116	212	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++++++++ + KN538712.1_FGP017 116 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHTL 207 7*******************8744455667777******************************************55***** PP trihelix 82 fdqle 86 +d+++ KN538712.1_FGP017 208 LDHMD 212 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-20	114	237	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MEGSNPPGNM SQGPSYGSLD LHGIPKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI 60 SDRVQLGQHG KIAHHHHQHH HRHHSKNRGS DEEEHDMNED AADGKDMKGS PWHRMKWTDS 120 MVKLLITAVS YTGEDPGADL GGGRRNYSMM QKKGKWKAIS KVMGERGCHV SPQQCEDKFN 180 DLNKRYKRLT DILGRGTACN VVENHTLLDH MDISEKMKED ARKILNSKHL FYEEMCSYHN 240 NNRISLPEDP ALQQALQLAL RCKEDNDFMR HASGDAELDD DQSEDSDYEE NEEEHRAVDT 300 NIRAPSMHKR MWHVVDHGDV GFVTSCSNDG SGRSDPYDVL DINKPFPDGA DLALVQKDLA 360 LKAADIQKHR LQIETKAVQL AKQRLKWEMF RKNKDLELEK LALENEQMML QNKRFELDLR 420 HKELELEIKI KGNANHP

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MEGSNPPGNM SQGPSYGSLD LHGIPKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDRVQLGQHG KIAHHHHQHH HRHHSKNRGS DEEEHDMNED AADGKDMKGS PWHRMKWTDS  120
MVKLLITAVS YTGEDPGADL GGGRRNYSMM QKKGKWKAIS KVMGERGCHV SPQQCEDKFN  180
DLNKRYKRLT DILGRGTACN VVENHTLLDH MDISEKMKED ARKILNSKHL FYEEMCSYHN  240
NNRISLPEDP ALQQALQLAL RCKEDNDFMR HASGDAELDD DQSEDSDYEE NEEEHRAVDT  300
NIRAPSMHKR MWHVVDHGDV GFVTSCSNDG SGRSDPYDVL DINKPFPDGA DLALVQKDLA  360
LKAADIQKHR LQIETKAVQL AKQRLKWEMF RKNKDLELEK LALENEQMML QNKRFELDLR  420
HKELELEIKI KGNANHP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538712.1_FGP017

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120533	0.0	AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBank	AK101154	0.0	AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615142.1	0.0	uncharacterized protein LOC4349866 isoform X2
TrEMBL	A0A0D3HIK9	0.0	A0A0D3HIK9_9ORYZ; Uncharacterized protein
STRING	OBART11G04060.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-83	sequence-specific DNA binding transcription factors