PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538712.1_FGP067
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 426aa    MW: 44962.6 Da    PI: 9.1931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538712.1_FGP067genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06189212123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++CpdC+++F  +++L+ H +t H
  KN538712.1_FGP067 189 FSCPDCDEVFVKPDSLELHRSTrH 212
                        89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349189217IPR007087Zinc finger, C2H2
PROSITE patternPS000280191212IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-17214425No hitNo description
Gene3DG3DSA:3.90.228.101.1E-10216424IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSSRNQPV SAAEGKNGGK KEKRRSSISR  60
SITCAGSICS TKESSVSSRG RGRRRRSGGG GGGSTSSRSL MGPGYHGDSA AAVSASSSFN  120
SVMTAATSAT ATTTTTTTSS SATSPPSALS SPLSSIGGSF RAMQIRKLSG CYLHCHSVLD  180
PRTLAAVVFS CPDCDEVFVK PDSLELHRST RHAVSELGAE DTSRNIVEII FQSSWLKKSA  240
PVCRIERILK VQSSDKTIRR FEQHKEAVKE KARSAGDEAG RNPRCVADGN ELLRFHCTTF  300
ACSLGIAGGT ALCCASSSPP PLHCKLCSII KDGFRVDGNG RIATMATSGR AHDTAEVLPD  360
GEKRAMLVCR VVAGRVKKLS SSNSSEDHDC DSVSPCSEGV YSDLDELFVF SPRAILPCFV  420
VIYSGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538712.1_FGP067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109480.0AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616600.10.0uncharacterized protein LOC4349886
TrEMBLA3C9080.0A3C908_ORYSJ; Uncharacterized protein
STRINGORGLA11G0041200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.19e-79C2H2-like zinc finger protein