PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538713.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 246aa    MW: 26202.3 Da    PI: 7.675
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538713.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.36.8e-31531653113
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92 
                        g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ +    ++++  sa    ++++  
  KN538713.1_FGP014  53 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHLcmGHHHHLPSAMPLMHHHHGH 144
                        78***************************************************************999444332222222222111112222 PP

                TCP  93 saakskksqksaasalnlake 113
                         ++   ++ + aa+a +la+e
  KN538713.1_FGP014 145 HHHADDDKYHVAAAAAALAAE 165
                        222333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.95154112IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-2754116IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MILGSNQAAA AAAAAAEEEA AELARKHTAA VATSRQWSAQ TESRIVRVSR VFGGKDRHSK  60
VKTVKGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAARHEID KLPPLQFPPQ  120
DHLCMGHHHH LPSAMPLMHH HHGHHHHADD DKYHVAAAAA ALAAEKEAAA AGGGGGGGGD  180
DVDGGGAAHM VGRFPAGGYH RFMGLNNPLG MLVFYSSEAE QFTVDNLGSQ GLSLSSARAF  240
HDQTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2059113155Putative transcription factor PCF6
5zkt_B1e-2059113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538713.1_FGP014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719640.0AK071964.1 Oryza sativa Japonica Group cDNA clone:J013079O19, full insert sequence.
GenBankAP0032740.0AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626531.11e-102transcription factor PCF6-like
RefseqXP_015626542.11e-102transcription factor PCF6-like
TrEMBLB9ET551e-102B9ET55_ORYSJ; Uncharacterized protein
STRINGOMERI01G28260.11e-105(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-41plastid transcription factor 1