PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538713.1_FGP098
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 541aa    MW: 59219 Da    PI: 8.2765
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538713.1_FGP098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR223.2e-07931171641
                TCR  16 kYCeCfaagkkCseeCkCedCkNkee 41 
                        +YCeCfa+g++C+  C+C++C+N+ +
  KN538713.1_FGP098  93 LYCECFASGVYCDG-CNCSNCFNNVK 117
                        6*************.********987 PP
2TCR51.12.7e-16163202140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  KN538713.1_FGP098 163 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 202
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-651118IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.40152203IPR005172CRC domain
PfamPF036382.1E-493115IPR005172CRC domain
SMARTSM011148.4E-20163204IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12166201IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MTGGDITRAW SHPSWRITNP PALSRETNST KPESPKPPRA RLYEGKDGTP TKKKCCNCKH  60
SKCLKFLMRF CSISTVDSKP IPLLSLVPLS LCLYCECFAS GVYCDGCNCS NCFNNVKNET  120
ARREAIDATL ERNPDAFRPK IGSSPHANRN NMEAAGDLPL VGKHNKGCHC KKSGCLKKYC  180
ECFQANILCS ENCKCMDCKN FEGSEERKAL FQGDHKNSIH MQQAANAAVN GAIGAAAFSS  240
PSTSRKRKHI DPSLDHSAKE NGAHRTNHVP QKNGMPSDGP LPINQPVHPP TLGPFKVTYR  300
PLLADIVQPG DVKELCKLLV VVSGNAAKAY AGKKSQEDKV VEKEDEMGGK REGEIGGSLA  360
STNHDREEND KDPNNQKASA DDPSTGGIRA GKASLEESKH DCNDDQKSNR PMSPGTLALM  420
CDEQDTMFMT SQNVVPQQAA PVNQNQSELY AEQERCVLTE FRDCLHKLVT FGRMKEEKFS  480
MAIKSEVPAH PMQANGVSRI PYSKEVDVPV VKTFLQSSSR HPAAGNSATG HLDKKPKHEN  540
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-218921220132Protein lin-54 homolog
5fd3_B2e-218921220132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538713.1_FGP098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621699.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-141TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D9YFA00.0A0A0D9YFA0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FTG70.0A0A0E0FTG7_ORYNI; Uncharacterized protein
STRINGOGLUM01G35920.10.0(Oryza glumipatula)
STRINGONIVA01G36110.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-122Tesmin/TSO1-like CXC domain-containing protein