PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538715.1_FGP061
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 106aa    MW: 11642.4 Da    PI: 9.2603
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538715.1_FGP061genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.94e-09628123
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                       C+gC tlL Y rGA+++RC++C+
  KN538715.1_FGP061  6 CSGCPTLLFYNRGASNIRCPSCH 28
                       **********************8 PP
2zf-LSD133.28.4e-114468125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg+Crt+L+ P+GA+ V+Ca C  V
  KN538715.1_FGP061 44 CGQCRTTLMHPPGASTVQCATCRYV 68
                       **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.3E-11431IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-9628IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:1.10.3820.109.7E-42065No hitNo description
TIGRFAMsTIGR010535.4E-114171IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-114468IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSELICSGCP TLLFYNRGAS NIRCPSCHRL NSTRSANQIA HLTCGQCRTT LMHPPGASTV  60
QCATCRYVNH VRDARPQTVL VENPKTLDDK GKLVSNVVVG VTSWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538715.1_FGP061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204541e-170AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
GenBankCT8307651e-170CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648991.12e-72protein LOL4
SwissprotQ84UR02e-73LOL4_ORYSJ; Protein LOL4
TrEMBLA0A0E0AQG57e-72A0A0E0AQG5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EHH03e-71A0A0E0EHH0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I6V37e-72A0A0E0I6V3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0LQX34e-71A0A0E0LQX3_ORYPU; Uncharacterized protein
STRINGOGLUM08G02000.11e-72(Oryza glumipatula)
STRINGOMERI08G02070.16e-72(Oryza meridionalis)
STRINGONIVA08G01810.11e-72(Oryza nivara)
STRINGOPUNC08G01880.16e-72(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.77e-29LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]