PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538716.1_FGP028

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 273aa MW: 30048.8 Da PI: 10.4124

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538716.1_FGP028	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ KN538716.1_FGP028 63 ACSRCSKAYAVHSDYKAHLKTC 84 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.5E-4	53	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MHRRRHKVPW KLLKREAGEA ARKRVFVCPE PTCLHHDPSH ALGDLVGIKK HFRRKHSGHR 60 QWACSRCSKA YAVHSDYKAH LKTCGTRGHT CDCGRVFSRV ESFIEHQDAC NAGRPRAAEA 120 SSSPGRGGGV VVGAPAAASS SQQQQQQLFA VPASLSRTAS SASPSSDLVE LATARRMRHQ 180 AQVELSRAHA LRDHAIRQVD ATQLQITCYS CRHKFRARAA AMISSDVASY VSSVVTEGGD 240 AEVDNDGNFH RRRLNADDGM PRSHSRTMAM DLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-18	58	122	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-18	58	122	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538716.1_FGP028

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106796	0.0	AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBank	AK119595	0.0	AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649378.1	4e-98	protein SHOOT GRAVITROPISM 5
Swissprot	Q9FRH4	5e-73	IDD16_ARATH; Protein indeterminate-domain 16
TrEMBL	A0A0D3H7I3	2e-97	A0A0D3H7I3_9ORYZ; Uncharacterized protein
TrEMBL	B9G1C0	1e-96	B9G1C0_ORYSJ; Uncharacterized protein
TrEMBL	Q6YSA1	9e-97	Q6YSA1_ORYSJ; Os08g0467100 protein
STRING	OS08T0467100-01	1e-97	(Oryza sativa)
STRING	OBART09G12250.1	3e-98	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.2	4e-71	indeterminate(ID)-domain 14

Publications ? help Back to Top
Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]