PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538717.1_FGP088

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 432aa MW: 48898.9 Da PI: 5.4116

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538717.1_FGP088	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.5e-07	145	166	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H KN538717.1_FGP088 145 FCGICGKGFKRDANLRMHMRGH 166 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.87E-5	142	170	No hit	No description
SMART	SM00355	0.0091	144	166	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.759	144	171	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.1E-5	145	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF53756	7.22E-59	192	423	No hit	No description
Pfam	PF00852	1.9E-29	245	423	IPR001503	Glycosyl transferase family 10

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006486	Biological Process	protein glycosylation
GO:0010493	Biological Process	Lewis a epitope biosynthetic process
GO:0016020	Cellular Component	membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0008417	Molecular Function	fucosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MDRDQMMNTM RDQTANLNPL FYPFMADDAL LGMAPPPPQQ LLPSASIQHM DWSPDTMLDN 60 LTFIEEKIRQ TNREEEEEEQ MGSPDYDELF KGWTNGGAMD ECVGAAGDEQ DAKFDGENPA 120 AAAEEEKYEV LQLEEDEILA PHTHFCGICG KGFKRDANLR MHMRGHGDEA QPIYGQSQHH 180 RNSHLRMKGL PLRVYLDLEA ARKPTGFEDI FIGYHAKDDV QVTYAGKSFH TSRSYHVSTE 240 KRNDALIYWS SSRCLPHRDK VAKDFLSLVP HHSFGKCLNN VDGPDMALSM YPVCSTNDNG 300 KPHWWDHLHC AMSHYKFVLA IENTKTESYV TEKLFYALEA GSVPIYFGAP NVWDFIPPNS 360 IIDASKFSSL RELASYVKAV ANDPVAYAEY HAWRRCGTLG NFGRSREMSL DTLPCRLCEL 420 VSKRGGRNAD AL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MDRDQMMNTM RDQTANLNPL FYPFMADDAL LGMAPPPPQQ LLPSASIQHM DWSPDTMLDN  60
LTFIEEKIRQ TNREEEEEEQ MGSPDYDELF KGWTNGGAMD ECVGAAGDEQ DAKFDGENPA  120
AAAEEEKYEV LQLEEDEILA PHTHFCGICG KGFKRDANLR MHMRGHGDEA QPIYGQSQHH  180
RNSHLRMKGL PLRVYLDLEA ARKPTGFEDI FIGYHAKDDV QVTYAGKSFH TSRSYHVSTE  240
KRNDALIYWS SSRCLPHRDK VAKDFLSLVP HHSFGKCLNN VDGPDMALSM YPVCSTNDNG  300
KPHWWDHLHC AMSHYKFVLA IENTKTESYV TEKLFYALEA GSVPIYFGAP NVWDFIPPNS  360
IIDASKFSSL RELASYVKAV ANDPVAYAEY HAWRRCGTLG NFGRSREMSL DTLPCRLCEL  420
VSKRGGRNAD AL

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in cell wall synthesis. Catalyzes alpha-1,4 glycosidic linkages and generates Lewis-a epitopes.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538717.1_FGP088

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067033	0.0	AK067033.1 Oryza sativa Japonica Group cDNA clone:J013089J22, full insert sequence.
GenBank	AM162283	0.0	AM162283.1 Oryza sativa mRNA for 4-alpha-L-fucosyltransferase (a4Lea gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664377.2	1e-180	PREDICTED: uncharacterized protein LOC102714333
Refseq	XP_015618206.1	0.0	alpha-(1,4)-fucosyltransferase
Swissprot	Q9C8W3	1e-130	FUT13_ARATH; Alpha-(1,4)-fucosyltransferase
TrEMBL	A0A0D3HRX1	0.0	A0A0D3HRX1_9ORYZ; Uncharacterized protein
TrEMBL	Q0IPS4	0.0	Q0IPS4_ORYSJ; Os12g0170600 protein (Fragment)
STRING	OS12T0170600-01	0.0	(Oryza sativa)
STRING	OBART12G04310.2	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-16	C2H2 family protein

Publications ? help Back to Top
Wilson IB, et al. Cloning and expression of cDNAs encoding alpha1,3-fucosyltransferase homologues from Arabidopsis thaliana. Biochim. Biophys. Acta, 2001. 1527(1-2): p. 88-96 [PMID:11420147] Sarria R, et al. Characterization of a family of Arabidopsis genes related to xyloglucan fucosyltransferase1. Plant Physiol., 2001. 127(4): p. 1595-606 [PMID:11743104] Léonard R, et al. The presence of Lewis a epitopes in Arabidopsis thaliana glycoconjugates depends on an active alpha4-fucosyltransferase gene. Glycobiology, 2002. 12(5): p. 299-306 [PMID:12070072] Strasser R, et al. A unique beta1,3-galactosyltransferase is indispensable for the biosynthesis of N-glycans containing Lewis a structures in Arabidopsis thaliana. Plant Cell, 2007. 19(7): p. 2278-92 [PMID:17630273] Rips S,Frank M,Elting A,Offenborn JN,von Schaewen A Golgi α1,4-fucosyltransferase of Arabidopsis thaliana partially localizes at the nuclear envelope. Traffic, 2017. 18(10): p. 646-657 [PMID:28753226]