PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538718.1_FGP059

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 294aa MW: 31958.3 Da PI: 6.1512

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538718.1_FGP059	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.7e-05	137	154	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 +Ka+iL +A+eY+ksLq KN538718.1_FGP059 137 TDKASILDEAIEYLKSLQ 154 68***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.6E-7	134	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-6	137	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-4	137	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAICSTDNEL VELLWHNGGV VAQPQAAAQA RVVFSSGGGQ SASVLTGDDT ETAAWMLNAR 60 QPKRPNHRRG DMDQRGELVQ LKFITCQRGE KFLAVILKDD TDVEKKGSDQ REDARIARTH 120 TSLQQGASPW TDTAMLTDKA SILDEAIEYL KSLQMQVQIM WMTTGMAPMM FPGAHQFMPP 180 IAVGMNSACM PAAQGLSQMS RLPYMNHSMP NHIPLNSSPA MNPMNVANQM QNIQLREASN 240 PFLHPDGWQT VPPQVSGPYA SGPQVAQQNQ ILKAPASTVL PNSGAEQPPT SDGI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538718.1_FGP059

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829014	0.0	CT829014.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633324.1	1e-106	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X4
Swissprot	Q10CH5	1e-107	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0D9VZS4	1e-105	A0A0D9VZS4_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZDY9	1e-105	A0A0D9ZDY9_9ORYZ; Uncharacterized protein
TrEMBL	I1PG38	1e-105	I1PG38_ORYGL; Uncharacterized protein
STRING	OMERI03G32920.1	1e-106	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	1e-17	phytochrome interacting factor 3-like 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]