PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538719.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 197aa    MW: 22796.5 Da    PI: 10.1212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538719.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07103150347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                        +WTt   + + +a + +  +   +W  +ar +g g++  ++k ++ k+
  KN538719.1_FGP004 103 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 150
                        7*****************99*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.52999155IPR017884SANT domain
SMARTSM007175.8E-6100153IPR001005SANT/Myb domain
SuperFamilySSF466898.07E-11102158IPR009057Homeodomain-like
CDDcd001670.00328103151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGWPRAWLLA RGFRGFRSRR PLEAIRHHSL APMPQINYQA DIVSQRDQEI QYPWLVTFVF  60
ADATDVKEPI CHFLFIENLE VHSTLNYLPI TVLRKSNMRM SSSWTTKQNK VFERALAIYD  120
RDTPDRWQNV ARAVGGGKSV DDVKRHYEKL IKDVDRIDST GGHQGSHYNS SNASSSSSSN  180
SRGSANEDQR RRYHNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-181041591165RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538719.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8307171e-156CT830717.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA008A17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627086.11e-48protein RADIALIS-like 3 isoform X2
RefseqXP_015627089.11e-48protein RADIALIS-like 3 isoform X2
RefseqXP_025878627.11e-48protein RADIALIS-like 3 isoform X2
RefseqXP_025878628.11e-48protein RADIALIS-like 3 isoform X2
RefseqXP_025878629.11e-48protein RADIALIS-like 3 isoform X2
RefseqXP_025878630.11e-48protein RADIALIS-like 3 isoform X2
RefseqXP_025878631.11e-48protein RADIALIS-like 3 isoform X2
TrEMBLA0A0D9YX449e-64A0A0D9YX44_9ORYZ; Uncharacterized protein
STRINGOGLUM02G30170.31e-64(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-22RAD-like 6