PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538719.1_FGP045
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 311aa    MW: 33342.8 Da    PI: 8.4863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538719.1_FGP045genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-09113160455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  KN538719.1_FGP045 113 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 160
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17107176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-10107164No hitNo description
PROSITE profilePS5088815.485109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16109171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6113160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD GESNSVCKRR RGKQQQQQQP CHPDQMAAAV  60
GKGRPERARP GAKKKAEVAS PKDSPATSAS TVTAGQKTDY IHVRARRGQA TDSHSLAERV  120
RRERISERMR YLQELVPGCN KVTGKAGMLD EIINYVQSLQ KQVEFLSMKI AASNPVVNFN  180
IVEDLFGRQL SQAACNPAAL PAMALPMAQV EPSCLQMSPL QQMQASAGSS GYGLEMVVSN  240
QYSPPGGPMS VPAGASVEPC LNVNGAAGWD IGSHGLFSGF DAPFQSVQSD CLLDNLKMEM  300
SRSKKASDLS I
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538719.1_FGP045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191830.0AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627481.10.0transcription factor bHLH63
TrEMBLA0A0D3F9G40.0A0A0D3F9G4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GBW20.0A0A0E0GBW2_ORYNI; Uncharacterized protein
STRINGONIVA02G32260.10.0(Oryza nivara)
STRINGOBART02G29490.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.25e-37bHLH family protein