PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538723.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 197aa    MW: 22241.5 Da    PI: 10.378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538723.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-101131531055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        rrRR+riN ++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  KN538723.1_FGP011 113 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 153
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-13101161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.488103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-8113153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-6119157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MWMLPTLTAI MSQDELQQPG QVQWTPAPEE KSEIAAKRRT QAGHGGDLGR QKKKARVSDK  60
RNQESMQSGS CSDNESNCSQ VNRRKVDRVA GGGNGKVPAR RRSATIAQSL YARRRRERIN  120
GRLRILQKLV PNGTKVDIST MLEEAVHYVK FLQLQIKVEV QIVCHDQMLS SDELWMYAPI  180
VYNGMDLGID LNISPPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199115RRRSATIAQSLYARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538723.1_FGP011
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907135e-84AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149595e-84AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.11e-96transcription factor BHLH089-like isoform X1
RefseqXP_025879771.11e-96transcription factor BHLH089-like isoform X1
SwissprotQ7XHI95e-44BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0D9ZDK01e-112A0A0D9ZDK0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0P1P71e-112A0A0E0P1P7_ORYRU; Uncharacterized protein
TrEMBLA0A0P0W3G11e-112A0A0P0W3G1_ORYSJ; Os03g0764200 protein
TrEMBLB8AKL61e-112B8AKL6_ORYSI; Uncharacterized protein
STRINGOGLUM03G34950.11e-113(Oryza glumipatula)
STRINGORUFI03G36640.11e-113(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-36bHLH family protein