PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538725.1_FGP066
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 204aa    MW: 22364.2 Da    PI: 9.9217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538725.1_FGP066genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13953347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +W+++E+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  KN538725.1_FGP066  9 PWSEQEHRLFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 53
                       8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.872158IPR017930Myb domain
SuperFamilySSF466891.5E-16359IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17556IPR006447Myb domain, plants
SMARTSM007173.8E-10656IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10649IPR009057Homeodomain-like
PfamPF002491.3E-10952IPR001005SANT/Myb domain
CDDcd001671.74E-9954No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRERKKGVPW SEQEHRLFLA GLEKLGKGDW RGISRSFVTT RTPTQVASHA QKFFLRHNSA  60
AKKTNNKRRS SLFDMVQDCD SGGRSLASSD PATRCNNNIS ASLSLQVSHH KSGDSAWPSS  120
ETPSVSEAQQ AMYIVSLISE SFCLRYDSYP STDRANSTSD KNVVAVSMTI GKQSVVPEAL  180
YGAQALQSLI CAKKVSKCSV LNLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538725.1_FGP066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0598130.0AK059813.1 Oryza sativa Japonica Group cDNA clone:006-205-B05, full insert sequence.
GenBankAK0685950.0AK068595.1 Oryza sativa Japonica Group cDNA clone:J013154K05, full insert sequence.
GenBankHQ8588110.0HQ858811.1 Oryza sativa Japonica Group isolate UT1191 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638259.11e-91transcription factor MYBS3-like
TrEMBLA0A0E0A3J41e-148A0A0E0A3J4_9ORYZ; Uncharacterized protein
TrEMBLQ6L5641e-148Q6L564_ORYSJ; Putative MYB transcription factor
STRINGOGLUM05G29240.11e-148(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-37MYB_related family protein