PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538725.1_FGP067

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 398aa MW: 44501 Da PI: 4.9518

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538725.1_FGP067	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.4	3.3e-14	305	343	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ kgC+C+kskC k+YCeCf++ + C+ +CkC++C+N+ KN538725.1_FGP067 305 KHAKGCSCRKSKCSKLYCECFKNSVGCTAKCKCQECSNS 343 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	20.733	202	345	IPR005172	CRC domain
SMART	SM01114	8.9E-12	305	346	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.8E-11	308	343	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MAAWFKLGGS AVRAMGALRG SPPAMLILLN SARLHQTAYN SSQQSTQVLG YKVAEWNWGI 60 GNKQYRMGIR ENRQGIGETD VGGSGSQNEL ENVESDRCWF WIEFLLDAIM ATVFTGGWLL 120 GSSISSWQTL KVAEQQIDAL AREQEEYLNK FEAKWVEELN RLKLEMMNEL EESEERLNRE 180 IDVLKMMARM AMEEKEMRMA MEEEACSPGP LHAWQTIRSG QNAAASSPAA PNYNCNCSGC 240 YNIKYYEDAI EEISDMIQMK NPNAFDPRII VSVQDATAAD PQSSTSAISD PKNTSDAMPG 300 NEQRKHAKGC SCRKSKCSKL YCECFKNSVG CTAKCKCQEC SNSFGVKRSE SSNKPDPDDK 360 SATDGLTHEE TTTENITLPG ETWNSDPNKR PRYFSLKI

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MAAWFKLGGS AVRAMGALRG SPPAMLILLN SARLHQTAYN SSQQSTQVLG YKVAEWNWGI  60
GNKQYRMGIR ENRQGIGETD VGGSGSQNEL ENVESDRCWF WIEFLLDAIM ATVFTGGWLL  120
GSSISSWQTL KVAEQQIDAL AREQEEYLNK FEAKWVEELN RLKLEMMNEL EESEERLNRE  180
IDVLKMMARM AMEEKEMRMA MEEEACSPGP LHAWQTIRSG QNAAASSPAA PNYNCNCSGC  240
YNIKYYEDAI EEISDMIQMK NPNAFDPRII VSVQDATAAD PQSSTSAISD PKNTSDAMPG  300
NEQRKHAKGC SCRKSKCSKL YCECFKNSVG CTAKCKCQEC SNSFGVKRSE SSNKPDPDDK  360
SATDGLTHEE TTTENITLPG ETWNSDPNKR PRYFSLKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538725.1_FGP067

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC098598	1e-156	AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence.
GenBank	AP014961	1e-156	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-156	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	6e-12	TESMIN/TSO1-like CXC 2