PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538727.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 189aa    MW: 20607.5 Da    PI: 7.0927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538727.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08109149954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  KN538727.1_FGP013 109 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 149
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14104160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-13106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6110149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-6123154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPLDFAMSS PGSDSGAPQG  60
SSSSSSSEAM REMIFHIAAL QPVEIDPEAV RPPKRRNVRI SKDPQSVAAR LRRERISERI  120
RILQRLVPGG TKMDTASMLD EAIHYVKFLK SQVQSLERAA AATGAAAHRA AAFGAAYPAA  180
LPMQHHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095RPPKRR
2109114RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538727.1_FGP013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604770.0AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence.
GenBankAK0704580.0AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence.
GenBankAP0056550.0AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07.
GenBankAP0060570.0AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610996.15e-91transcription factor HEC2
SwissprotQ9SND48e-45HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0E0M1Z53e-90A0A0E0M1Z5_ORYPU; Uncharacterized protein
STRINGOPUNC09G11020.15e-91(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]