PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538728.1_FGP070
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 205aa    MW: 22050.8 Da    PI: 10.4264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538728.1_FGP070genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-111291691055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  KN538728.1_FGP070 129 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 169
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.79E-11128173No hitNo description
PfamPF000102.0E-8129169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTPACKRKVE DRKDESCTDN VARKKARSTA ATVVQKKGNK NAQSKKAQKG ACSRSSNQKG  60
SNGGGDGGNV QSSSTNYLSD DDSLEMTSCS NVSSASKKSS LSSPATGHGG AKARAGRGAA  120
TDPQSLYARK RRERINERLK ILQNLIPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDDM  180
WMFAPIAYNG VNVGLDLKIS PPQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538728.1_FGP070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235681e-137AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322141e-137AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149591e-137AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-137CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.11e-123transcription factor bHLH85
TrEMBLA0A0E0KA901e-125A0A0E0KA90_ORYPU; Uncharacterized protein
STRINGOPUNC03G07300.11e-126(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-47bHLH family protein